Performance Evaluation for Field Programmable Gate Array-based Bioinformatics Sequence Alignment

Laiq Hasan; Mottaqiallah Taouil; Haseeb Zafar

Performance Evaluation for Field Programmable Gate Array-based Bioinformatics Sequence Alignment

Laiq Hasan, Mottaqiallah Taouil, Haseeb Zafar

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Sequence alignment is a computationally expensive activity in bioinformatics that can benefit significantly from Field Programmable Gate Array-based high-performance computing systems. This paper evaluates the performance of such systems for bioinformatics sequence alignment applications considering various parameters like data bus width (W), the number of processing elements, and the maximum operating frequency.

Iaith wreiddiol	Saesneg
Tudalennau (o-i)	17-22
Nifer y tudalennau	6
Cyfnodolyn	IETE Journal of Research
Cyfrol	59
Rhif cyhoeddi	1
Statws	Cyhoeddwyd - 2013
Cyhoeddwyd yn allanol	Ie

Mynediad at Ddogfen

https://www.tandfonline.com/doi/abs/10.4103/0377-2063.110622

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Dolen i’r cyhoeddiad yn Scopus

Dyfynnu hyn

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title = "Performance Evaluation for Field Programmable Gate Array-based Bioinformatics Sequence Alignment",

abstract = "Sequence alignment is a computationally expensive activity in bioinformatics that can benefit significantly from Field Programmable Gate Array-based high-performance computing systems. This paper evaluates the performance of such systems for bioinformatics sequence alignment applications considering various parameters like data bus width (W), the number of processing elements, and the maximum operating frequency.",

keywords = "Bioinformatics, Field programmable gate arrays, High performance computing, Performance evaluation, Sequence alignment",

author = "Laiq Hasan and Mottaqiallah Taouil and Haseeb Zafar",

year = "2013",

language = "English",

volume = "59",

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journal = "IETE Journal of Research",

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T1 - Performance Evaluation for Field Programmable Gate Array-based Bioinformatics Sequence Alignment

AU - Hasan, Laiq

AU - Taouil, Mottaqiallah

AU - Zafar, Haseeb

PY - 2013

Y1 - 2013

N2 - Sequence alignment is a computationally expensive activity in bioinformatics that can benefit significantly from Field Programmable Gate Array-based high-performance computing systems. This paper evaluates the performance of such systems for bioinformatics sequence alignment applications considering various parameters like data bus width (W), the number of processing elements, and the maximum operating frequency.

AB - Sequence alignment is a computationally expensive activity in bioinformatics that can benefit significantly from Field Programmable Gate Array-based high-performance computing systems. This paper evaluates the performance of such systems for bioinformatics sequence alignment applications considering various parameters like data bus width (W), the number of processing elements, and the maximum operating frequency.

KW - Bioinformatics

KW - Field programmable gate arrays

KW - High performance computing

KW - Performance evaluation

KW - Sequence alignment

UR - http://www.scopus.com/inward/record.url?scp=85024026405&partnerID=8YFLogxK

M3 - Article

AN - SCOPUS:85024026405

SN - 0377-2063

VL - 59

SP - 17

EP - 22

JO - IETE Journal of Research

JF - IETE Journal of Research

IS - 1

ER -